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iva

iterative virus sequence assembler

Description

IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high depth.

IVA's main algorithm works by iteratively extending contigs using aligned read pairs. Its input can be just read pairs, or additionally you can provide an existing set of contigs to be extended. Alternatively, it can take reads together with a reference sequence.

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Homepage

https://github.com/sanger-pathogens/iva


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367 other people were interested in this package here. The newest known version of this software is 1.0.9+ds-4 (Information last updated 4 days ago.)