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velvet

Nucleic acid sequence assembler for very short reads

Description

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.

Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.

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Homepage

http://www.ebi.ac.uk/~zerbino/velvet/


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44 other people were interested in this package here. The newest known version of this software is 1.2.10+dfsg1-3 (Information last updated 10 minutes ago.)