allelecount
NGS copy number algorithms
Description
Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings). The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg.Upload more screenshots
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Homepage
https://github.com/cancerit/alleleCount
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