bamclipper

Remove gene-specific primer sequences from SAM/BAM alignments

Description

Remove gene-specific primer sequences from SAM/BAM alignments of PCR amplicons by soft-clipping.

bamclipper.sh soft-clips gene-specific primers from BAM alignment file based on genomic coordinates of primer pairs in BEDPE format.

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Homepage

https://github.com/tommyau/bamclipper


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