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bedtools

suite of utilities for comparing genomic features

Description

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distributed in the filo package.

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Homepage

https://github.com/arq5x/bedtools2


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2232 other people were interested in this package here. The newest known version of this software is 2.27.1+dfsg-2 (Information last updated about 2 hours ago.)