bio-vcf
domain specific language (DSL) for processing the VCF format
Description
Bio-vcf provides a domain specific language (DSL) for processing the VCF format. Record named fields can be queried with regular expressions, e.g. sample.dp>20 and rec.filter !~ /LowQD/ and rec.tumor.bcount[rec.alt]>4
Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf
is not only very fast for genome-wide (WGS) data, it also comes with a
really nice filtering, evaluation and rewrite language and it can
output any type of textual data, including VCF header and contents in
RDF and JSON.Upload more screenshots
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Homepage
https://rubygems.org/gems/bio-vcf/
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