canu

single molecule sequence assembler for genomes

Description

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

* Detect overlaps in high-noise sequences using MHAP

* Generate corrected sequence consensus

* Trim corrected sequences

* Assemble trimmed corrected sequences

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