index and search tool in genomic sequences
DescriptionCassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions. This package contains the cassiopee and cassiopeeknife tools.
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