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cassiopee

index and search tool in genomic sequences

Description

Cassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions.

This package contains the cassiopee and cassiopeeknife tools.

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Homepage

https://github.com/osallou/cassiopee-c


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882 other people were interested in this package here. The newest known version of this software is 1.0.9-1+b1 (Information last updated 1 day ago.)