dascrubber

alignment-based scrubbing pipeline for DNA sequencing reads

Description

The Dazzler Scrubbing Suite produces a set of edited reads that are guaranteed to

* be continuous stretches of the underlying genome (i.e. no unremoved

adapters and not chimers)

* have no very low quality stretches (i.e. the error rate never exceeds some

reasonable maximum, 20% or so in the case of Pacbio data).

Its secondary goal is to do so with the minimum removal of data and splitting of reads.

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