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Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes


The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs) which are significantly associated with various molecular phenotypes (i.e. expression of known genes, cytosine methylation levels, etc). It performs scans for all possible phenotype-variant pairs in cis (i.e. variants located within a specific window around a phenotype). FastQTL implements a new permutation scheme (Beta approximation) to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels.

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1297 other people were interested in this package here. The newest known version of this software is 2.184+dfsg-7+b1 (Information last updated 1 day ago.)