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fastqtl

Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes

Description

The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs) which are significantly associated with various molecular phenotypes (i.e. expression of known genes, cytosine methylation levels, etc). It performs scans for all possible phenotype-variant pairs in cis (i.e. variants located within a specific window around a phenotype). FastQTL implements a new permutation scheme (Beta approximation) to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels.

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Homepage

http://fastqtl.sourceforge.net/


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709 other people were interested in this package here. The newest known version of this software is 2.184+dfsg-6+b1 (Information last updated 3 days ago.)