ggd-utils
programs for use in ggd
Description
Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that: * a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
As a result, any new genome going into GGD will have
a .genome file that will dictate the sort order
and presence or absence of the 'chr' prefix for chromosomesUpload more screenshots
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Homepage
https://github.com/gogetdata/ggd-utils
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