phylogenetic analysis of genome sequences
DescriptionGubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences. Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.
1515 other people were interested in this package here. The newest known version of this software is 2.4.1-2 (Information last updated 1 day ago.)
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