harvest-tools

archiving and postprocessing for reference-compressed genomic multi-alignments

Description

HarvestTools is a utility for creating and interfacing with Gingr files, which are efficient archives that the Harvest Suite uses to store reference-compressed multi-alignments, phylogenetic trees, filtered variants and annotations. Though designed for use with Parsnp and Gingr, HarvestTools can also be used for generic conversion between standard bioinformatics file formats.

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Homepage

https://harvest.readthedocs.org/en/latest/content/harvest-tools.html


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