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hmmer

profile hidden Markov models for protein sequence analysis

profile hidden Markov models for protein sequence analysis
from version 3.0-2

Description

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

Homepage

http://hmmer.janelia.org/


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