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in-memory DNA sequence kmer counting, filtering & graph traversal


khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.

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1278 other people were interested in this package here. The newest known version of this software is 2.1.2+dfsg-7+b1 (Information last updated 7 minutes ago.)