Detection of various kinds of polymorphisms in RNA-seq data
DescriptionKisSplice is a piece of software that enables the analysis of RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows one to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads.
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Install this software package
If the package is available for the distribution you are currently using on your computer then install the software by clicking on…Install kissplice