kleborate

tool to screen Klebsiella genome assemblies

Description

Kleborate is a tool to screen Klebsiella genome assemblies for:

* MLST sequence type

* species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)

* ICEKp associated virulence loci: yersiniabactin (ybt),

colibactin (clb)

* virulence plasmid associated loci: salmochelin (iro), aerobactin

(iuc), hypermucoidy (rmpA, rmpA2)

* antimicrobial resistance genes, including quinolone resistance SNPs

and colistin resistance truncations

* K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles

and Kaptive

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