kleborate-examples

tool to screen Klebsiella genome assemblies (example data)

Description

Kleborate is a tool to screen Klebsiella genome assemblies for:

* MLST sequence type

* species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)

* ICEKp associated virulence loci: yersiniabactin (ybt),

colibactin (clb)

* virulence plasmid associated loci: salmochelin (iro), aerobactin

(iuc), hypermucoidy (rmpA, rmpA2)

* antimicrobial resistance genes, including quinolone resistance SNPs

and colistin resistance truncations

* K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles

and Kaptive

This package provides example data end tests that are used in autopkgtest.

Upload more screenshots

Please help extend the collection of screenshots. Just make a screenshot and upload it here. You don't need to register or anything.

Hint: upload an image here from your clipboard with Ctrl-V

Homepage

Install this software package

If the package is available for the distribution you are currently using on your computer then install the software by clicking on…