libbio-db-gff-perl

Storage and retrieval of sequence annotation data

Description

Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators.

The following operations are supported by this module:

- retrieving a segment of sequence based on the ID of a landmark

- retrieving the DNA from that segment

- finding all annotations that overlap with the segment

- finding all annotations that are completely contained within the

segment

- retrieving all annotations of a particular type, either within a

segment, or globally

- conversion from absolute to relative coordinates and back again,

using any arbitrary landmark for the relative coordinates

- using a sequence segment to create new segments based on relative

offsets

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Homepage

https://metacpan.org/release/Bio-DB-GFF

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