library to query large collection of NGS sequences
DescriptionGk-arrays are provided as a simple-to-use C++ library dedicated to queries on large collection of sequences as produced by high-throughput sequencers (e.g. HiSeq 2000 from Illumina, 454 from Roche). Gk-arrays index k-mers of reads and allows one to answer different queries on that read collection (e.g. how many reads share this k-mer? where does this k-mer occur in the read collection?). Gk-arrays consist of a space-efficient alternative to hash tables while being similar in terms of query times.
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Install this software package
If the package is available for the distribution you are currently using on your computer then install the software by clicking on…Install libgkarrays1