Custom compression for CRAM and others
DescriptionThis library implements the custom CRAM codecs used for "EXTERNAL" block types. These consist of two variants of the rANS codec (8-bit and 16-bit renormalisation, with run-length encoding and bit-packing also supported in the latter), a dynamic arithmetic coder, and custom codecs for name/ID compression and quality score compression derived from fqzcomp. They come with small command line test tools to act as both compression exploration programs and as part of the test harness.
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Install this software package
If the package is available for the distribution you are currently using on your computer then install the software by clicking on…Install libhtscodecs2