libnhgri-blastall-perl

Perl extension for running and parsing NCBI's BLAST 2.x

Description

NHGRI::Blastall will enable usage of BLAST out of a Perl script, if BLAST2 or WU-BLAST are installed locally. Main features are:

* run BLAST (also via network, which requires blastcl3)

* BLAST single sequences against each other or against a given library

* format databases

* mask out repetitive DNA

* read, parse and filter existing BLAST reports

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