libnhgri-blastall-perl

Perl extension for running and parsing NCBI's BLAST 2.x

Description

NHGRI::Blastall will enable usage of BLAST out of a Perl script, if BLAST2 or WU-BLAST are installed locally. Main features are:
 * run BLAST (also via network, which requires blastcl3)
 * BLAST single sequences against each other or against a given library
 * format databases
 * mask out repetitive DNA
 * read, parse and filter existing BLAST reports

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Homepage

ftp://ftp.nhgri.nih.gov/pub/software/blastall/


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