ltrsift

postprocessing and classification of LTR retrotransposons

LTRsift main window
LTRsift main window

Description

LTRsift is a graphical desktop tool for semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations, such as the ones generated by LTRharvest and LTRdigest. Its user-friendly interface displays LTR retrotransposon candidates, their putative families and their internal structure in a hierarchical fashion, allowing the user to "sift" through the sometimes large results of de novo prediction software. It also offers customizable filtering and classification functionality.

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Homepage

https://www.zbh.uni-hamburg.de/en/forschung/gi/software/ltrsift.html

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