mecat2
ultra-fast and accurate de novo assembly tools for SMRT reads
Description
An improved version of MECAT. It is an ultra-fast and accurate mapping and error correcting de novo assembly tools for single molecula sequencing (SMRT) reads. MECAT2 consists of the following three modules: 1. mecat2map: a fast and accurate alignment tool for SMRT reads.
2. mecat2cns: correct noisy reads based on their pairwise overlaps.
3. fsa: a string graph based assembly tool.
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Homepage
https://github.com/xiaochuanle/MECAT2
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Install mecat2