megadepth

computes coverage from BigWig and BAM sequencing files

Description

A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.

This package is a successor of the program 'bamcount'.

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Homepage

https://github.com/ChristopherWilks/megadepth


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Install megadepth