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in- and out-of-core kmer counting and utilities


meryl computes the kmer content of genomic sequences. Kmer content is represented as a list of kmers and the number of times each occurs in the input sequences. The kmer can be restricted to only the forward kmer, only the reverse kmer, or the canonical kmer (lexicographically smaller of the forward and reverse kmer at each location). Meryl can report the histogram of counts, the list of kmers and their counts, or can perform mathematical and set operations on the processed data files.

This package is part of the Kmer suite.

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1254 other people were interested in this package here. The newest known version of this software is 0~20150903+r2013-8 (Information last updated about 16 hours ago.)