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mhap

locality-sensitive hashing to detect long-read overlaps

Description

The MinHash Alignment Process (MHAP) MHAP (pronounced MAP) is a reference implementation of a probabilistic sequence overlapping algorithm. Designed to efficiently detect all overlaps between noisy long-read sequence data. It efficiently estimates Jaccard similarity by compressing sequences to their representative fingerprints composed on min-mers (minimum k-mer).

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Homepage

http://mhap.readthedocs.org/en/stable/


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