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mummer

Efficient sequence alignment of full genomes

Efficient sequence alignment of full genomes
from version 3.23~dfsg-2

Description

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

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Homepage

http://mummer.sourceforge.net/


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2334 other people were interested in this package here. The newest known version of this software is 3.23+dfsg-5 (Information last updated 3 days ago.)