nanofilt
filtering and trimming of long read sequencing data
Description
Filtering and trimming of long read sequencing data. Filtering on quality and/or read length, and optional trimming after passing filters. Reads from stdin, writes to stdout. Optionally reads directly from an uncompressed file specified on the command line. Intended to be used: 1. directly after fastq extraction.
2. prior to mapping.
3. in a stream between extraction and mapping.
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Homepage
https://github.com/wdecoster/nanofilt
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