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parsnp

rapid core genome multi-alignment

Description

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

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Homepage

https://harvest.readthedocs.org/en/latest/content/parsnp.html


Statistics

1435 other people were interested in this package here. The newest known version of this software is 1.2.1+dfsg-2 (Information last updated about 21 hours ago.)