pbalign

map Pacific Biosciences reads to reference DNA sequences

Description

pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.

This package is part of the SMRTAnalysis suite.

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Homepage

https://github.com/PacificBiosciences/pbalign

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Install pbalign