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phybin

binning/clustering newick trees by topology

Description

PhyBin is a simple command line tool that classifies a set of Newick tree files by their topology. The purpose of it is to take a large set of tree files and browse through the most common tree topologies.

It can do simple binning of identical trees or more complex clustering based on an all-to-all Robinson-Foulds distance matrix.

phybin produces output files that characterize the size and contents of each bin or cluster (including generating GraphViz-based visual representations of the tree topologies).

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Homepage

http://www.cs.indiana.edu/~rrnewton/projects/phybin/


Statistics

691 other people were interested in this package here. The newest known version of this software is 0.3-3 (Information last updated about 13 hours ago.)