plip

fully automated protein-ligand interaction profiler

Description

The Protein-Ligand Interaction Profiler (PLIP) is a tool to analyze and visualize protein-ligand interactions in PDB files.

Features include:

* Detection of eight different types of noncovalent interactions

* Automatic detection of relevant ligands in a PDB file

* Direct download of PDB structures from wwPDB server if valid

PDB ID is given

* Processing of custom PDB files containing protein-ligand complexes

(e.g. from docking)

* No need for special preparation of a PDB file, works out of the box

* Atom-level interaction reports in rST and XML formats for easy parsing

* Generation of PyMOL session files (.pse) for each pairing, enabling easy

preparation of images for publications and talks

* Rendering of preview image for each ligand and its interactions

with the protein

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