bayesian estimation of gene trees taking the species tree into account
DescriptionPrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees. The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
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Install this software package
If the package is available for the distribution you are currently using on your computer then install the software by clicking on…Install prime-phylo