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Detection of (Co-)orthologs in large-scale protein analysis


Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes.

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1160 other people were interested in this package here. The newest known version of this software is 6.0.16+dfsg-1 (Information last updated 4 days ago.)