python-htseq

Python high-throughput genome sequencing read analysis utilities

Description

HTSeq can be used to performing a number of common analysis tasks when working with high-throughput genome sequencing reads:

* Getting statistical summaries about the base-call quality scores to

study the data quality.

* Calculating a coverage vector and exporting it for visualization in

a genome browser.

* Reading in annotation data from a GFF file.

* Assigning aligned reads from an RNA-Seq experiments to exons and

genes.

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