library to enable flexible, scalable operations on genomic interval dataframes


Building bioframe directly on top of pandas enables immediate access to a rich set of dataframe operations. Working in Python enables rapid visualization (e.g. matplotlib, seaborn) and iteration of genomic analyses.

Bioframe implements a variety of genomic interval operations directly on dataframes. Bioframe also includes functions for loading diverse genomic data formats, and performing operations on special classes of genomic intervals, including chromosome arms and fixed size bins.

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Install python3-bioframe