python3-nanomath

simple math function for other Oxford Nanopore processing scripts

Description

This Python3 module provides a few simple math and statistics functions for other scripts processing Oxford Nanopore sequencing data.

* Calculate read N50 from a set of lengths get_N50(readlenghts)

* Remove extreme length outliers from a dataset

remove_length_outliers(dataframe, columname)

* Calculate the average Phred quality of a read ave_qual(qualscores)

* Write out the statistics report after calling readstats function

write_stats(dataframe, outputname)

* Compute a number of statistics, return a dictionary

calc_read_stats(dataframe)

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