python3-ncls
datastructure for interval overlap queries
Description
The Nested Containment List is a datastructure for interval overlap queries, like the interval tree. It is usually an order of magnitude faster than the interval tree both for building and query lookups. The implementation here is a revived version of the one used in the now defunct PyGr library, which died of bitrot. It was now made less memory-consuming and wrapper functions allow batch-querying the NCLS for further speed gains. This package was implemented to be the cornerstone of the PyRanges project, but was made available to the Python community as a stand-alone library.Upload more screenshots
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Homepage
https://github.com/biocore-ntnu/ncls
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