store of the trained model for pangolin to access


Pangolin runs a multinomial logistic regression model trained against lineage assignments based on GISAID data.

Legacy pangolin runs using a guide tree and alignment hosted at cov-lineages/lineages. Some of this data is sourced from GISAID, but anonymised and encrypted to fit with guidelines. Appropriate permissions have been given and acknowledgements for the teams that have worked to provide the original SARS-CoV-2 genome sequences to GISAID are also hosted here.

This package contains the store of the trained model for pangolin.

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Install python3-pangolearn