2D representation of genomic intervals and their annotations


A PyRanges object must have the columns Chromosome, Start and End. These describe the genomic position and function as implicit row labels. A Strand column is optional and adds strand information to the intervals. Any other columns are allowed and are considered metadata.

The structure can be filled from .bed, .bam or .gff files, also from tabular or textual representations.

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Install python3-pyranges