python3-shasta
nanopore whole genome assembly (dynamic library)
Description
De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells. Computational methods used by the Shasta assembler include: * Using a run-length representation of the read sequence. This makes
the assembly process more resilient to errors in homopolymer
repeat counts, which are the most common type of errors in Oxford
Nanopore reads.
* Using in some phases of the computation a representation of the read
sequence based on markers, a fixed subset of short k-mers (k ≈ 10).
Shasta assembly quality is comparable or better than assembly quality
achieved by other long read assemblers.
This package contains the dynamic library that can be interfaced and
imported within Python.Upload more screenshots
Please help extend the collection of screenshots. Just make a screenshot and upload it here. You don't need to register or anything.
Upload a screenshotHint: upload an image here from your clipboard with Ctrl-V
Homepage
https://github.com/chanzuckerberg/shasta
Install this software package
If the package is available for the distribution you are currently using on your computer then install the software by clicking on…
Install python3-shasta