r-bioc-decontam

identify contaminants in marker-gene and metagenomics sequencing sata

Description

Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,...). Requires DNA quantitation data or sequenced negative control samples.

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Homepage

https://bioconductor.org/packages/decontam/


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