GNU R tools for making and manipulating transcript centric annotations
DescriptionA set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.
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Install this software package
If the package is available for the distribution you are currently using on your computer then install the software by clicking on…Install r-bioc-genomicfeatures