r-cran-sctransform

Variance Stabilizing Transformations for Single Cell UMI Data

Description

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

Upload more screenshots

Please help extend the collection of screenshots. Just make a screenshot and upload it here. You don't need to register or anything.

Upload a screenshot

Hint: upload an image here from your clipboard with Ctrl-V


Homepage

https://cran.r-project.org/package=sctransform


Install this software package

If the package is available for the distribution you are currently using on your computer then install the software by clicking on…

Install r-cran-sctransform

Cookies help us deliver our services. By using our services, you agree to our use of cookies. Learn more