salmid

rapid Kmer based Salmonella identifier from sequence data

Description

SalmID enables rapid confirmation of Salmonella spp. and subspp. from sequence data. This is done by checking taxonomic ID of single isolate samples. Currently only IDs Salmonella species and subspecies, and some common contaminants (Listeria, Escherichia).

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Homepage

https://github.com/hcdenbakker/SalmID


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Install salmid