sambamba

tools for working with SAM/BAM data

Description

Sambamba positions itself as a performant alternative to samtools and provides tools for

* Powerful filtering with sambamba view --filter

* Picard-like SAM header merging in the merge tool

* Optional for operations on whole BAMs

* Fast copying of a region to a new file with the slice tool

* Duplicate marking/removal, using the Picard criteria

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