seqmagick

imagemagick-like frontend to Biopython SeqIO

Description

Seqmagick is a little utility to expose the file format conversion in BioPython in a convenient way.

Features include:

* Modifying sequences:

- Remove gaps

- Reverse & reverse complement

- Trim to a range of residues

- Change case

- Sort by length or ID

* Displaying information about sequence files

* Subsetting sequence files by:

- Position

- ID

- Deduplication

* Filtering sequences by quality score

* Trimming alignments to a region of interest defined by the forward

and reverse primers

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