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sga

de novo genome assembler that uses string graphs

Description

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

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Homepage

https://github.com/jts/sga


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686 other people were interested in this package here. The newest known version of this software is 0.10.15-4 (Information last updated 1 day ago.)