shovill

Assemble bacterial isolate genomes from Illumina paired-end reads

Description

Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with those too.

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Homepage

https://github.com/tseemann/shovill


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Install shovill

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